omni.pipelines.func.segmentation#
Functions
|
Brain extraction |
- omni.pipelines.func.segmentation.brain_extraction(output_path: str, ref_func_debias: str, fractional_intensity_threshold: float = 0.5, initial_warp_field: str = None)[source]#
Brain extraction
- Parameters:
- output_pathstr
Output path to write out files to.
- ref_func_debiasstr
Reference functional.
- fractional_intensity_thresholdfloat
Fractional intensity threshold for bet.
- initial_warp_fieldstr
An initial distortion correction that should be applied before brain extraction
- Returns:
- str
Functional mask.
- str
Brain extracted functional.