omni.pipelines.bids#
Functions
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BIDS processor. |
- omni.pipelines.bids.bids_proc(bids_path: str, output_path: str, participant_label: ~typing.List[str], function_to_run: ~typing.Callable = <function pre_proc>, combine_sessions: bool = False, skip_validation: bool = False, database: ~typing.Optional[str] = None, reset_database: bool = False, skip_database: bool = False, dryrun: bool = False, single_rest_run: bool = False, **kwargs) None[source]#
BIDS processor.
- Parameters:
- bids_pathstr
Path to BIDS dataset.
- output_pathstr
Path to output files.
- participant_labelList[str]
List of participant labels to process.
- function_to_run: Callable
Function to run. Must take the following arguments: output_path, t1, t2, func, metadata, kwargs
- skip_validationbool
Skip BIDS validator.
- databasestr
Path to alternative location for BIDS sql database.
- reset_databasebool
Delete the current BIDS sql database.
- skip_databasebool
Skip reading/writing from BIDS data sql database.
- dryrunbool
Run bids parsing, but don’t do any processing.
- single_rest_runbool
If True, only process the first rest run (For paper).