omni.pipelines.epi.stages#

Classes

`AlignAffineEpiToAnatStage`([path])	Align affine epi to anat stage.
`CombineTransformsStage`([path])	Combine transforms stage.
`DistortionCorrectionStage`([path])	Distortion correction stage.

class omni.pipelines.epi.stages.AlignAffineEpiToAnatStage(path='epi_proc_0_align_affine_epi_to_anat', **kwargs)[source]#

Align affine epi to anat stage.

Attributes:

args: A dictionary of only the provided input arguments to the stage on construction.
hash_output: Location of hash files for the stage.
input_args: A dictionary of all input arguments to the stage.
inputs: Inputs argument names for the stage.
outputs: Output arguments names for the stage.
results: A dictionary of the output return values for the stage.
state: A flag that specifies whether the current stage has been run (The callable has been executed).

Methods

__init__:

class omni.pipelines.epi.stages.CombineTransformsStage(path='epi_proc_2_combine_transforms', **kwargs)[source]#

Combine transforms stage.

Attributes:

args: A dictionary of only the provided input arguments to the stage on construction.
hash_output: Location of hash files for the stage.
input_args: A dictionary of all input arguments to the stage.
inputs: Inputs argument names for the stage.
outputs: Output arguments names for the stage.
results: A dictionary of the output return values for the stage.
state: A flag that specifies whether the current stage has been run (The callable has been executed).

Methods

__init__:

class omni.pipelines.epi.stages.DistortionCorrectionStage(path='epi_proc_1_distortion_correction', **kwargs)[source]#

Distortion correction stage.

Attributes:

args: A dictionary of only the provided input arguments to the stage on construction.
hash_output: Location of hash files for the stage.
input_args: A dictionary of all input arguments to the stage.
inputs: Inputs argument names for the stage.
outputs: Output arguments names for the stage.
results: A dictionary of the output return values for the stage.
state: A flag that specifies whether the current stage has been run (The callable has been executed).

Methods

__init__: