omni.pipelines.anat.stages#

Classes

`AlignAnatStage`([path])	Align anat stage.
`AlignAtlasStage`([path])	Align atlas stage.
`BrainExtractionStage`([path])	Brain extraction stage.
`DebiasStage`([path])	Debias stage.
`DeobliqueAnatStage`([path])	Deoblique anat stage.
`WeightMaskAndAutoboxStage`([path])	Weight mask and autobox stage.

class omni.pipelines.anat.stages.AlignAnatStage(path: str = 'anat_proc_2_align_anat', **kwargs)[source]#

Align anat stage.

Attributes:

args: A dictionary of only the provided input arguments to the stage on construction.
hash_output: Location of hash files for the stage.
input_args: A dictionary of all input arguments to the stage.
inputs: Inputs argument names for the stage.
outputs: Output arguments names for the stage.
results: A dictionary of the output return values for the stage.
state: A flag that specifies whether the current stage has been run (The callable has been executed).

Methods

__init__:

class omni.pipelines.anat.stages.AlignAtlasStage(path: str = 'anat_proc_4_align_atlas', **kwargs)[source]#

Align atlas stage.

Attributes:

args: A dictionary of only the provided input arguments to the stage on construction.
hash_output: Location of hash files for the stage.
input_args: A dictionary of all input arguments to the stage.
inputs: Inputs argument names for the stage.
outputs: Output arguments names for the stage.
results: A dictionary of the output return values for the stage.
state: A flag that specifies whether the current stage has been run (The callable has been executed).

Methods

__init__:

class omni.pipelines.anat.stages.BrainExtractionStage(path: str = 'anat_proc_3_brain_extraction', **kwargs)[source]#

Brain extraction stage.

Attributes:

args: A dictionary of only the provided input arguments to the stage on construction.
hash_output: Location of hash files for the stage.
input_args: A dictionary of all input arguments to the stage.
inputs: Inputs argument names for the stage.
outputs: Output arguments names for the stage.
results: A dictionary of the output return values for the stage.
state: A flag that specifies whether the current stage has been run (The callable has been executed).

Methods

__init__:

class omni.pipelines.anat.stages.DebiasStage(path: str = 'anat_proc_1_debias', **kwargs)[source]#

Debias stage.

Attributes:

args: A dictionary of only the provided input arguments to the stage on construction.
hash_output: Location of hash files for the stage.
input_args: A dictionary of all input arguments to the stage.
inputs: Inputs argument names for the stage.
outputs: Output arguments names for the stage.
results: A dictionary of the output return values for the stage.
state: A flag that specifies whether the current stage has been run (The callable has been executed).

Methods

__init__:

class omni.pipelines.anat.stages.DeobliqueAnatStage(path: str = 'anat_proc_0_deoblique_anat', **kwargs)[source]#

Deoblique anat stage.

Attributes:

args: A dictionary of only the provided input arguments to the stage on construction.
hash_output: Location of hash files for the stage.
input_args: A dictionary of all input arguments to the stage.
inputs: Inputs argument names for the stage.
outputs: Output arguments names for the stage.
results: A dictionary of the output return values for the stage.
state: A flag that specifies whether the current stage has been run (The callable has been executed).

Methods

__init__:

class omni.pipelines.anat.stages.WeightMaskAndAutoboxStage(path: str = 'anat_proc_5_weight_mask_and_autobox', **kwargs)[source]#

Weight mask and autobox stage.

Attributes:

args: A dictionary of only the provided input arguments to the stage on construction.
hash_output: Location of hash files for the stage.
input_args: A dictionary of all input arguments to the stage.
inputs: Inputs argument names for the stage.
outputs: Output arguments names for the stage.
results: A dictionary of the output return values for the stage.
state: A flag that specifies whether the current stage has been run (The callable has been executed).

Methods

__init__: