omni.pipelines.func.masks#
Functions
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Autobox and normalize functional. |
- omni.pipelines.func.masks.autobox_and_normalize(output_path: str, ref_func_debias: str, ref_func_debias_bet: str, ref_func_debias_mask: str, func_do_moco: str, func_do: str)[source]#
Autobox and normalize functional.
- Parameters:
- output_pathstr
Output path to write out files to.
- ref_func_debiasstr
Debiased reference functional.
- ref_func_debias_betstr
Debiased reference functional brain extracted.
- ref_func_debias_maskstr
Reference functional brain mask.
- func_do_mocostr
Motion corrected functional.
- func_dostr
Deobliqued functional.
- Returns:
- str
Debiased reference functional + Autobox/Normalized.
- str
Debiased reference functional brain extracted + Autobox/Normalized.
- str
Reference functional brain mask + Autobox/Normalized.
- str
Motion corrected functional + Autobox/Normalized.
- str
Deobliqued functional + Autobox/Normalized.