omni_affine

Overview

Example commands

omni_affine

Arguments

Required arguments

output

Path to output file.

Optional arguments

-i INPUT_AFFINE, --input_affine INPUT_AFFINE

Input affine file to convert.

-o, --omnify

Convert input to omni affine format.

-a, --afnify

Convert input to afni affine format.

-f, --fslify

Convert input to fsl affine format (must provide target/source arguments).

-t TARGET, --target TARGET

Specifies target image to calculate fsl affine over.

-s SOURCE, --source SOURCE

Specifies source image to calculate fsl affine over.

-r RIGID_TRANSFORM ..., --rigid_transform RIGID_TRANSFORM ... (Number of Arguments: 6)

Generates a omni affine that does the specified transform (angles are in degrees, translations in physical coordinates (usually mm).

-b, --six_body

convert affine list to rigid body list

-n, --invert

Invert the provided affine file.

-v, --version

Show program’s version and exit.

-h, --help

show this help message and exit